A transposable element prevents severe hemophilia B and provides insights into the evolution of new- and old world primates

by Johannes Kopp, Alice Rovai, Michael Ott, Heiner Wedemeyer, Andreas Tiede, Hans Jürgen Böhmer, Tomas Marques, Jörg Langemeier, Jens Bohne, Simon Alexander Krooss

Alu-elements comprise a large part of the human genome and some insertions have been shown to cause diseases. Here, we illuminate the protective role of an Alu-element in the 3’UTR of the human Factor 9 gene and its ability to ameliorate a poly(A) site mutation in a hemophilia B patient, preventing him from developing a severe disease. Using a minigene, we examined the disease-causing mutation and the modifying effect of the transposon in cellulo. Further, we simulated evolutionary scenarios regarding alternative polyadenylation before and after Alu insertion. A sequence analysis revealed that Old World monkeys displayed a highly conserved polyadenylation sites in this Alu-element, whereas New World monkeys lacked this motif, indicating a selective pressure. We conclude that this transposon has inserted shortly before the separation of Old and New World monkeys and thus also serves as a molecular landmark in primate evolution.